PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250927
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 241aa    MW: 26267.8 Da    PI: 9.0351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250927genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-184190255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr++  +g+WvAeIr+p   + r +r +lg+f t +eAa a++aa++kl+g
  MDP0000250927 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATSFEAALAYDAAARKLYG 90
                   69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.82E-2040100No hitNo description
SuperFamilySSF541712.94E-204199IPR016177DNA-binding domain
PROSITE profilePS5103221.474198IPR001471AP2/ERF domain
SMARTSM003801.6E-3341104IPR001471AP2/ERF domain
PfamPF008471.2E-134190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3041100IPR001471AP2/ERF domain
PRINTSPR003677.8E-94253IPR001471AP2/ERF domain
PRINTSPR003677.8E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSTSEMSVGV AEKKPAKRPA QGSSRKGCMK GKGGPENAMC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FATSFEAALA YDAAARKLYG SKAKLNLPDQ QAPNYHHHQL NQHLQHQVLG  120
LILHVIYAAP VKDIAVPVIH NNFPNVKVDQ PHGNYNSGGA ETLPEQDGMK VEKNMSSGVN  180
NEGMDGIFWG NMSESFPVFD DSMWTEAAMS LDLPVVADQG IFGGGSWMGI AGKHHIRLNG  240
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-184298360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388158.11e-159dehydration-responsive element-binding protein 2D-like
TrEMBLA0A498J8W41e-99A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_008388158.11e-158(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-41ERF family protein