PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 282aa    MW: 31735.3 Da    PI: 5.194
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250487genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.11.2e-34791985128
            NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 
                    frF+Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e k+wyf+s+++        +nr+t++gyWk+ g +++++s+    +
  MDP0000250487  79 FRFDPTDEELVVHFLQRKATLLPFHP-DVIPDLHLYPYDPWELNGKALSEGKQWYFYSRKA--------QNRVTSNGYWKTLGIEEPIFSSsssnS 165
                    9**********************999.99**************97777889******9974........58*******************977666 PP

            NAM  97 gelvglkktLvfykgrapk.gektdWvmheyrl 128
                    +++vg+k+ L+fy g+ap+ g kt+W+mheyrl
  MDP0000250487 166 TSKVGMKRYLTFYVGEAPNsGIKTNWIMHEYRL 198
                    667**********997765289*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.24875249IPR003441NAC domain
SuperFamilySSF1019411.83E-4077208IPR003441NAC domain
PfamPF023657.3E-2279198IPR003441NAC domain
SuperFamilySSF1019411.83E-40237245IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASPTVTFQN RRLGPSPIFW SEDARPRTRE THAPDVALGL AIDAGPTPRA SLVTRATQRW  60
TLSPQQFGPI TSLSSLLVFR FDPTDEELVV HFLQRKATLL PFHPDVIPDL HLYPYDPWEL  120
NGKALSEGKQ WYFYSRKAQN RVTSNGYWKT LGIEEPIFSS SSSNSTSKVG MKRYLTFYVG  180
EAPNSGIKTN WIMHEYRLSS SASDCASSST TTTTTTRSSK RRGQPKTVSN ACVATHEYSG  240
YILCRVYERD EEEDDDDDGT ELSCLDEVFL SLDDLDEISL PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-32622227169NAC domain-containing protein 19
3swm_B1e-32622227169NAC domain-containing protein 19
3swm_C1e-32622227169NAC domain-containing protein 19
3swm_D1e-32622227169NAC domain-containing protein 19
3swp_A1e-32622227169NAC domain-containing protein 19
3swp_B1e-32622227169NAC domain-containing protein 19
3swp_C1e-32622227169NAC domain-containing protein 19
3swp_D1e-32622227169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153120.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963145.11e-150NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK61e-74NC104_ARATH; NAC domain-containing protein 104
TrEMBLD9ZJ881e-106D9ZJ88_MALDO; NAC domain class transcription factor
STRINGXP_009333606.11e-113(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-68xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]