PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000247079
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 224aa    MW: 25170.8 Da    PI: 8.5782
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000247079genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.65.8e-262112197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilk 82 
                    +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ + ++++a++e++r         ++ ++sl++eA  r+ +Pv+Ga+g++l+
  MDP0000247079   2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRpgidnifgyQIKIKSLLFEAVGRTMNPVNGATGLLLS 97 
                    6******************************************************************999************************** PP

         DUF260  83 lqqqleqlkaelall 97 
                    ++++++q++ e++l+
  MDP0000247079  98 GKWEVCQAAMETVLR 112
                    *********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.2461116IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-192110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR  60
PGIDNIFGYQ IKIKSLLFEA VGRTMNPVNG ATGLLLSGKW EVCQAAMETV LRGGSLEPLP  120
EYSRDIHYVR EHQVREVQRQ STKKKRPNFD VNXNDDYVEN FRSPDLNLSL TSATXLTSRT  180
KRRDCRAATP SVEDSETTTL XSSSPENNCT AGNLERTKLL RLFI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373050.21e-152LOB domain-containing protein 37-like
SwissprotQ9SN233e-57LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A498JNH21e-150A0A498JNH2_MALDO; Uncharacterized protein
STRINGXP_008373048.11e-151(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-58LOB domain-containing protein 38