PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241137
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 474aa    MW: 52989.1 Da    PI: 5.9666
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241137genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.72.3e-90594712373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                    ++lL++cA+a++++d++laq++L+ l+++a +dgd++qRl+  f++AL ar ar  + ++ +a++ s+++ + +++++++++l  f +++P+++f+
  MDP0000241137  59 EQLLVHCAKAIETNDATLAQQILWVLNNIAPQDGDSNQRLTCAFLRALIARAARiGSCKVLAAMANSQANFTIHTHKFSVVELasFIDLTPWHRFG 154
                    79****************************************************5444667777777777666888888888789*********** PP

           GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                    + +aN aIleaveg + vHi+D+++++++Q p+L +a+asR+    +pp l++T+ g +e +      ++ee+g++L +fA++ ++ +ef+v+   
  MDP0000241137 155 FTAANAAILEAVEGYSVVHIVDLSLTHCMQIPTLVDAIASRQdgnVSPPLLKLTVAGTMEDVppmLDLSYEELGSKLVNFARSRNIXLEFRVIpss 250
                    ******************************************655569**********998898888999***********************888 PP

           GRAS 182 ....vakrledleleeLrvkp.gEalaVnlvlqlhrll..........................desvsleserdevLklvkslsPkvvvvveqea 246
                         a+ +++l++++L   + gEal+Vn++++lh++                           ++s  ++s r+ +Lk +++l P++vv+v++++
  MDP0000241137 251 ytdgFANLIQQLRVQNLVYAEsGEALVVNCHMMLHYISeealtlpainpnpissgstssyafdvASSSLSSSLRTMFLKELRGLDPTIVVLVDEDV 346
                    5555555555556666655559****************************************98555555667*********************** PP

           GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                    d++s++ + r+ +a++y +  +d+ ++ lpr s++r+++E+  + ++i+nv+a  g++r+er e + +W +r+++a F++v+++ +a++++k++l 
  MDP0000241137 347 DLTSNNPVCRLRSAFNYLWIPYDTXDTFLPRGSKQRQWYEAD-VCWKIENVIAYXGFQRVERLEPKCRWVQRMRNANFRSVSFGXDAVSEVKAMLD 441
                    ******************************************.99*************************************************** PP

           GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +++  g+ ++ e++ +vl+Wk++++v+++aW
  MDP0000241137 442 EHA-AGWGLKREEEDVVLTWKGHNVVFATAW 471
                    ***.8999*********************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.55632453IPR005202Transcription factor GRAS
PfamPF035148.0E-8859471IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MMQFTDTPPP TXHQIITTPY SNNLPIMMNK NQTYXTRLWP GFPTSKSLGT NFGDANCMEQ  60
LLVHCAKAIE TNDATLAQQI LWVLNNIAPQ DGDSNQRLTC AFLRALIARA ARIGSCKVLA  120
AMANSQANFT IHTHKFSVVE LASFIDLTPW HRFGFTAANA AILEAVEGYS VVHIVDLSLT  180
HCMQIPTLVD AIASRQDGNV SPPLLKLTVA GTMEDVPPML DLSYEELGSK LVNFARSRNI  240
XLEFRVIPSS YTDGFANLIQ QLRVQNLVYA ESGEALVVNC HMMLHYISEE ALTLPAINPN  300
PISSGSTSSY AFDVASSSLS SSLRTMFLKE LRGLDPTIVV LVDEDVDLTS NNPVCRLRSA  360
FNYLWIPYDT XDTFLPRGSK QRQWYEADVC WKIENVIAYX GFQRVERLEP KCRWVQRMRN  420
ANFRSVSFGX DAVSEVKAML DEHAAGWGLK REEEDVVLTW KGHNVVFATA WMPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-414047372474Protein SHORT-ROOT
5b3h_B4e-424047318420Protein SHORT-ROOT
5b3h_E4e-424047318420Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113110.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060859e-32AP006085.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT28L24, TM0128, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338421.20.0scarecrow-like protein 32
SwissprotQ9SN221e-179SCL32_ARATH; Scarecrow-like protein 32
TrEMBLM5VYZ60.0M5VYZ6_PRUPE; Uncharacterized protein
STRINGXP_008338421.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-175GRAS family protein