PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000240094
Common NameLOC103421355, NAC10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 204aa    MW: 23300.8 Da    PI: 4.7147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000240094genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.94.9e-3781311128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF+Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e k+wyf+s+r+        +nr+t++gyWk+ g +++++s+ 
  MDP0000240094   8 LPPGFRFDPTDEELVVHFLQRKAALLPFHP-DVIPDLHLYPYDPWELNGKALSEGKQWYFYSRRA--------QNRVTNNGYWKTLGIEEPIFSSs 94 
                    79*************************999.99**************97777889*******985........589******************96 PP

            NAM  96 ...kgelvglkktLvfykgrap.kgektdWvmheyrl 128
                        +++vg+kk L+f+ g+ap +g kt+W+mheyrl
  MDP0000240094  95 ssnPTKKVGMKKYLTFFVGEAPnSGIKTNWTMHEYRL 131
                    6655566**********997762589*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-455170IPR003441NAC domain
PROSITE profilePS5100544.6238172IPR003441NAC domain
PfamPF023652.2E-239131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGDDQFKLPP GFRFDPTDEE LVVHFLQRKA ALLPFHPDVI PDLHLYPYDP WELNGKALSE  60
GKQWYFYSRR AQNRVTNNGY WKTLGIEEPI FSSSSSNPTK KVGMKKYLTF FVGEAPNSGI  120
KTNWTMHEYR LSSSASDCAS SSTTTTTSRS SKRRGQSNTE YSGYVLCKVY EREDDDDDGT  180
ELSCLDEVFL SLDDLDEISL PNYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-37517314166NO APICAL MERISTEM PROTEIN
1ut4_B2e-37517314166NO APICAL MERISTEM PROTEIN
1ut7_A2e-37517314166NO APICAL MERISTEM PROTEIN
1ut7_B2e-37517314166NO APICAL MERISTEM PROTEIN
3swm_A2e-37517317169NAC domain-containing protein 19
3swm_B2e-37517317169NAC domain-containing protein 19
3swm_C2e-37517317169NAC domain-containing protein 19
3swm_D2e-37517317169NAC domain-containing protein 19
3swp_A2e-37517317169NAC domain-containing protein 19
3swp_B2e-37517317169NAC domain-containing protein 19
3swp_C2e-37517317169NAC domain-containing protein 19
3swp_D2e-37517317169NAC domain-containing protein 19
4dul_A2e-37517314166NAC domain-containing protein 19
4dul_B2e-37517314166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153120.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315771.11e-152NAC domain-containing protein 104-like
SwissprotQ8GWK69e-78NC104_ARATH; NAC domain-containing protein 104
TrEMBLD9ZJ881e-151D9ZJ88_MALDO; NAC domain class transcription factor
STRINGXP_008357603.11e-130(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-77xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]