PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 275aa    MW: 29933.7 Da    PI: 8.5013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239820genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.98.7e-3027128197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l+p +     p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q++
  MDP0000239820  27 SCNGCRVLRKGCSDSCMLRPSLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTINPVNGAVGLLWTGNWHVCQAA 122
                    6*********************************************************************************************** PP

         DUF260  92 aelall 97 
                    +e++l 
  MDP0000239820 123 VETVLX 128
                    998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575128No hitNo description
PROSITE profilePS5089119.4126132IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-2527126IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKTNLSADLS PIPPPPRQWL TWIIIMSCNG CRVLRKGCSD SCMLRPSLQW IETPEAQGHA  60
TVFVAKFFGR AGLMSFISAV PDSQRPVLFQ SLLFEACGRT INPVNGAVGL LWTGNWHVCQ  120
AAVETVLXGG TLRPIPELLG GASTPDEASE ADVGGVTIST DMWRLRDPSH NSGSSSRFTS  180
SRSARASSPK RKRSAASDES STKLLQPQQH ADLDLRLTPT PSFKPKPKPE TRRPGTPSMN  240
SDESGVSTCF ESGFEDQHPY SYAVGTERKL LNLFP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.54530.0bud| flower| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338422.20.0LOB domain-containing protein 37-like
SwissprotQ9FN112e-83LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A498I0N00.0A0A498I0N0_MALDO; Uncharacterized protein
STRINGXP_008338422.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.19e-78LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]