PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000238683
Common NameTCP7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 287aa    MW: 30373.2 Da    PI: 9.2582
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000238683genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.3e-3736156289
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                    a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  ++n ss+         
  MDP0000238683  36 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGNTSSSapsttssdh 130
                    78**************************************************************99999776.33333333333333344445556 PP

            TCP  89 .........................k 89 
                                             +
  MDP0000238683 131 kpqllxptpfilgkrvrgslddpenN 156
                    77888888777775554443322220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3542172IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2094296IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSNSEAPNNE LTNGGGGAGA MVEQTSQRPS SNGVLAVKKP PSKDRHSKVD GRGRRIRMPI  60
ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSLRGGNTSS  120
SAPSTTSSDH KPQLLXPTPF ILGKRVRGSL DDPENNHSHN HNHDASAAKD PSDNHANNDG  180
AVSVVGHSMA SMLGPNAGGP GGFWAPHFGQ VWSFAATPPP ELMAQSALSH QQQQHQHHQQ  240
HSLFLQQQPM GEASAARVGN YLPGHLNLLA SLSGGHGNSG RREDDQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138760.0bud| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126107e-87CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankAP0149587e-87AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0047767e-87AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAK2407987e-87AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365949.10.0PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX29e-87TCP7_ARATH; Transcription factor TCP7
TrEMBLD9ZJD51e-178D9ZJD5_MALDO; TCP domain class transcription factor
STRINGGLYMA10G43190.18e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-67TCP family protein