PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000233303
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 256aa    MW: 27707.7 Da    PI: 7.6967
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000233303genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.11.2e-2729132199
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C ++p++      ++q++++ +++k++G++ +l+l++a ++  r+++++sl+yeA+ r+ +P yG+vg+++++ +  +q++
  MDP0000233303  29 SCNGCRVLRKGCSDECEIRPCIewiksSESQANATLFLAKFYGRAGLLNLINAGSPALRPAIFKSLLYEACGRIVNPTYGSVGLMWSGGWXQCQAA 124
                    6*********************9999778899**************************************************************** PP

         DUF260  92 aelallke 99 
                    ++++l ++
  MDP0000233303 125 VDAVLEGS 132
                    99887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.46328134IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-2129126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPEMPLTNSV KYTSNLLHSH CSLERMRMSC NGCRVLRKGC SDECEIRPCI EWIKSSESQA  60
NATLFLAKFY GRAGLLNLIN AGSPALRPAI FKSLLYEACG RIVNPTYGSV GLMWSGGWXQ  120
CQAAVDAVLE GSPIIGIDAD VLKRNTNPNL DPPHKSGDIR HVSRDPTSGX SSHNKATTRN  180
KLKRXMNRPK IQPESATGSN TKSLAQLCNV PDPDDLYPIP QGNGSSGDQQ AADDQDGEVG  240
LELTLGLGLP PLTHLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339675.21e-168LOB domain-containing protein 42
SwissprotQ9CA306e-71LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A498HJT50.0A0A498HJT5_MALDO; Uncharacterized protein
STRINGXP_008339675.11e-168(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-73LOB domain-containing protein 42