PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000231993
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 325aa    MW: 36519.4 Da    PI: 10.3002
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000231993genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.4e-31264321359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYegeH+h+
  MDP0000231993 264 DEFSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCFEDPAMLIVTYEGEHKHS 321
                    99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.6E-13216260IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.7E-33250322IPR003657WRKY domain
PROSITE profilePS5081129.379257323IPR003657WRKY domain
SuperFamilySSF1182901.7E-26258322IPR003657WRKY domain
SMARTSM007747.8E-37262322IPR003657WRKY domain
PfamPF031068.7E-26264320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEEVEAANRA AVGSCHRVLN LLCKPKPWKN LQVETEVAVX KFKRVLSLLS HGRGRVRKLK  60
KNLNPPPFPQ NIFSDGPNYS DISPKPLQLL PPIFPKTPHT QKXFLGNPVP DANLKLPLQI  120
PKTXTMXQHQ EEREKLQFXP QQVKYQSEMV FSGIDSGINL AFDRSSSSFN PSMTSARSFM  180
SCLSVGDGDE VNTGRDSFRL IDGVPWVSGQ SSQQQRRCTG VVENGSVNCG GSGKCHXPKK  240
RKLRVKRTFK VPAISDKTSD IPPDEFSWRK YGQKPIKGSP YPRGYYKCSS IRGCPARKHV  300
ERCFEDPAML IVTYEGEHKH SQSAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-202603201271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345720.20.0probable WRKY transcription factor 74
SwissprotQ93WU62e-88WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A498K3L10.0A0A498K3L1_MALDO; Uncharacterized protein
STRINGXP_008345720.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-89WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]