PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000223609
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 270aa    MW: 29710.1 Da    PI: 6.9467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000223609genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-174695255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr++  +g+WvAeIr+p   + r  r +lg+++t +eAa a++aa++kl+g
  MDP0000223609 46 TYKGVRQRM-WGKWVAEIREP---N-RgPRLWLGTYDTSYEAALAYDAAARKLYG 95
                   69****999.**********8...2.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-2045105No hitNo description
PROSITE profilePS5103221.75946103IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-2046104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-2946105IPR001471AP2/ERF domain
PfamPF008477.1E-134695IPR001471AP2/ERF domain
SMARTSM003801.2E-3446109IPR001471AP2/ERF domain
PRINTSPR003671.1E-84758IPR001471AP2/ERF domain
PRINTSPR003671.1E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSKWEMSDGS SSVGVPEKKP AKLPAQGSSR KGCMRGKGGP ENAMCTYKGV RQRMWGKWVA  60
EIREPNRGPR LWLGTYDTSY EAALAYDAAA RKLYGSEAQL NLPDQQAPKY HPHQLNQHPQ  120
HQVFPSSANP RVPPQIPNQT LVQNNPSGTG TNPACYAPPV KDIAVPVIHN NFPNAKVDQP  180
HGNYNSGGAE TLPEQGGRKV EKNMSSGVNN EGMDGIFWGN MSDNFPVFDD WIWTEEAISL  240
DLPVVAYQGI FDHGFVDGNC WETLHRPNGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1647103360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388157.21e-159dehydration-responsive element-binding protein 2D-like
TrEMBLA0A498J8W41e-121A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_008366770.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-38ERF family protein