PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000219146
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 544aa    MW: 59091.3 Da    PI: 5.7296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000219146genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12359401754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  MDP0000219146 359 MAERRRRQKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 401
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.701352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16355421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9358401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-13359405No hitNo description
Gene3DG3DSA:4.10.280.109.9E-16359414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.77E-7473514No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MLPRLNGGVW MDDREDRETV SWTRTSAAAI AGTTENKDEM GCLSTFKSMM EVEDDWYMAA  60
NNNIQGHSDV RDISFSPSFA DPESLLLNPV DSSSSCSPSS SVFNNLDPNQ VHYYMPQNPN  120
LSSLLNVVPN NPLDHGFDLG CDIGFLDTQA STGGSSLMNR GGGVLTGFND LSSNSQMNAQ  180
NLGSNLQFST TRMPQLLENS SNFSGFQGLD DGSANALFPN RPKLLRPLES FPSVGAQPTL  240
FQKRAALRKN LADGGRNLGV LGSQGGLVLN EGNERKREMG VENEKKRKMS GGDDVDDLSF  300
DGSGLNYDSD EFTENTKVDE GAKNGGNSSN AKSFVTAAGG GGGGGRKGKK KGLPAKNLMA  360
ERRRRQKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQRINNLHN ELESIPPGSA  420
LTPTGNTFHP LTPTPATLPN RIKEELCPSS LPSPNGQPAR VEVRQREGRA VNIHMFCGRR  480
PGLLLSTMRT LDNLGLDIQQ AVISCFNGFA MDVFRAEQCM EGQDVHPDQI KAVLLDLIGF  540
HGMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348364KKKGLPAKNLMAERRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.97490.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3589040.0KU358904.1 Pyrus ussuriensis bHLH1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374176.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-136ICE1_ARATH; Transcription factor ICE1
TrEMBLB2BF970.0B2BF97_MALDO; BHLH transcriptional factor
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-129bHLH family protein