PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000206676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 360aa    MW: 40448.7 Da    PI: 8.0125
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000206676genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.3e-1368127155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++ V++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  MDP0000206676  68 SRFRAVSRHRWTGRFEAHLWDkLSWNStqkKKgKQVYLGAYDEEESAARAYDLAAVKYWG 127
                    68999****************888888886448************************998 PP

2AP233.31.2e-101541991555
            AP2  15 WvAeIrdpse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++A++r  s+   +g   +k+ +lg++gt eeAa+a++ a+ +++g
  MDP0000206676 154 YLASLRRKSSgfsRGvpGNKYLYLGTYGTQEEAARAYDIAAIEYRG 199
                    7788888444476678888*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.39E-1768137No hitNo description
PfamPF008474.8E-1068127IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1468137IPR016177DNA-binding domain
PROSITE profilePS5103218.3669135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-1469136IPR001471AP2/ERF domain
SMARTSM003809.0E-2169141IPR001471AP2/ERF domain
PROSITE profilePS5103213.314124207IPR001471AP2/ERF domain
SMARTSM003805.0E-11159213IPR001471AP2/ERF domain
PfamPF008471.8E-6167199IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-10170209IPR016177DNA-binding domain
CDDcd000185.11E-13171209No hitNo description
Gene3DG3DSA:3.30.730.102.3E-11172208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEFMMVRNEE NAGRCRLRTA DPEAQAARCV KRRRRDPPAV GGNSQTEQQL AQKPADQASA  60
ATTVKRSSRF RAVSRHRWTG RFEAHLWDKL SWNSTQKKKG KQVYLGAYDE EESAARAYDL  120
AAVKYWGAST FTNFPISDYD NEIEIMQSMT KEEYLASLRR KSSGFSRGVP GNKYLYLGTY  180
GTQEEAARAY DIAAIEYRGI NAVTNFDLSS YIRWLKPRAD DMIASQQVPE AVIKPKNTPF  240
AXSSYMTTEQ SPFSLTNPFA SDYVHSPRKQ EVIRTSKSSS PTALGLLLQS SVFRDLVQKN  300
SSFSDDDSID GEEPRNQLQA GRDDEFGGII YDGVGGSPFV CSSNTDENFT WNSFTSLIFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341750.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6PQQ33e-66AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM5X9330.0M5X933_PRUPE; Uncharacterized protein
STRINGVIT_14s0108g00050.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-68AP2 family protein