PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000206674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 406aa    MW: 45550.2 Da    PI: 7.493
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000206674genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-1570129155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++++gr++A+++d  s+n    k+ k+++lg +g +e Aa+a++ a++k++g
  MDP0000206674  70 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYGEEESAARAYDLAALKYWG 129
                    789******************888855555447*************************98 PP

2AP251.72.2e-16172223155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  MDP0000206674 172 SKYRGVARHHHNGRWEARIGRaF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 223
                    89****99**********99977...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1570139IPR016177DNA-binding domain
CDDcd000187.31E-1970139No hitNo description
PfamPF008476.6E-1370129IPR001471AP2/ERF domain
PROSITE profilePS5103219.11171137IPR001471AP2/ERF domain
SMARTSM003801.1E-2271143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1471138IPR001471AP2/ERF domain
PRINTSPR003673.0E-57283IPR001471AP2/ERF domain
CDDcd000181.59E-24172233No hitNo description
SuperFamilySSF541717.85E-18172233IPR016177DNA-binding domain
PfamPF008478.4E-12172223IPR001471AP2/ERF domain
SMARTSM003808.9E-26173237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18173232IPR001471AP2/ERF domain
PROSITE profilePS5103219.085173231IPR001471AP2/ERF domain
PRINTSPR003673.0E-5213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MELTMVKNEE NPGRRRLCAE DPEAQAARCV KRRRRDPPPV AVSCDNSQTE QKLPQKLADQ  60
TVTTTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNVTQKK KGKQVYLGAY GEEESAARAY  120
DLAALKYWGA STFTNFPISD YEKEIEIMQS VTKEEFLASL RRKSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRAFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRCLK  240
PKAGDTVATQ EPEAVTEPQN MPFMTSXYIP ADETSFSHTN PFASDYLNSP RKQEVTRSST  300
NLNAGSKSSS PTALGLLLQS SIFRELVQKN SNFSEDDSTD GEEPKNQPQA GSDDEYGGIF  360
YEGTGDNPFD CSSTTDGDNP WNNIASTILL NQPTKANASE TLFFVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRLCAEDPEAQAARCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341540.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLM5X9330.0M5X933_PRUPE; Uncharacterized protein
STRINGPOPTR_0017s11470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-92AP2 family protein