PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000204900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 539aa    MW: 59320 Da    PI: 5.2682
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000204900genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.6e-13265315155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ +Aa+a+++a+ k +g
  MDP0000204900 265 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 315
                    89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-24265325No hitNo description
SuperFamilySSF541711.11E-16265325IPR016177DNA-binding domain
PfamPF008471.1E-8265315IPR001471AP2/ERF domain
SMARTSM003808.0E-31266329IPR001471AP2/ERF domain
PROSITE profilePS5103215.29266323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-16266323IPR001471AP2/ERF domain
PRINTSPR003675.3E-6267278IPR001471AP2/ERF domain
PRINTSPR003675.3E-6305325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MWDLNDSPDQ RPRGEESEGC SSQKTSADGD EEKGKRVGSV SSSSSSAVVI EEDGSDEEED  60
QDDDGPTKIA KKQGGGGGGG GKIFGFSVTH EESMDSDPPV TVTRQFFXVE QDSSSNFDVM  120
GSATGGGSIP PPPSTSSSFP RAHWVGVNFG QSDSGSPGKP PPTAEASHQP MKKSRRGPRS  180
QELPVPGXYV LPEDWPLGVS YLGLWEASLS WAYDRAAIKF RGVEADINFS IEDYEEDLKQ  240
MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEI  300
DAARAYDKAA IKCNGKEAVT NFDPSIYENE LNPSESSGVN AADHDLDLSL GSSNSKKNNQ  360
ALGNDNNSQN GALEHQHSVS MQFDADWRSQ GFRPKLNIQR DRSRDDIDPQ RRDGYLESEA  420
LLRTNLQSQV PAEMHKYGQF XSRRPTAEDI QMPHNFPPHF NSPNYHHIQF PSSSEGGGRI  480
GSDLSLSMSD HHQQWQSATP TSDLFATAAA SSGFPPQIRP SYTQNGWLQK NGFHSLTRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29680.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5065840.0KM506584.1 Eriobotrya japonica transcription factor AP2-1 (AP2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372425.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479277e-92AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0H3YBC60.0A0A0H3YBC6_9R
STRINGVIT_07s0031g00220.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-82AP2 family protein