PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200319
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 469aa    MW: 51885.9 Da    PI: 8.5607
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200319genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-17136185155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MDP0000200319 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                    78*******************......55************************997 PP

2AP240.85.4e-13228278155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  MDP0000200319 228 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 278
                    79********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16136195IPR016177DNA-binding domain
PfamPF008473.1E-9136185IPR001471AP2/ERF domain
CDDcd000183.47E-11137195No hitNo description
SMARTSM003801.7E-31137199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-17137193IPR001471AP2/ERF domain
PROSITE profilePS5103217.662137193IPR001471AP2/ERF domain
CDDcd000181.59E-24228286No hitNo description
SuperFamilySSF541713.86E-16228287IPR016177DNA-binding domain
PfamPF008479.1E-9228278IPR001471AP2/ERF domain
SMARTSM003806.7E-31229292IPR001471AP2/ERF domain
PROSITE profilePS5103215.027229286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-15229287IPR001471AP2/ERF domain
PRINTSPR003671.4E-5230241IPR001471AP2/ERF domain
PRINTSPR003671.4E-5268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MLDLNLGFVS RXDVSMSQNK LLTPSPVECS GSFNSSSNLT VTGDDDDDST TLNFLAPNDG  60
VSANHQDGRR TIQLFPLAQS VSSSSSSSAA SKKXWLGLSS GSRLELEPTY YAPAXPRIAX  120
PQQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGIEADI NFSVSDYEDD IKQMSSFTKE EFVHILRRQS TGFSRGSSKF RGVTLHKCGR  240
WEARMGQFLG KKYVYLGLFD SEIEAARAYD KAAIKCNGRE AVTNFDRSSY DGEIMSEANN  300
EGSHQSLDLN LGIAPPLVSE IQKENMNLRS FPFQLGCDDI PIHLRARNEI SVPAPMRSHL  360
SHGSIVASKE PPIMSNMNSS FFPFHMERAT EKSMDVNSFP NWAWQVQGLN GGATSMPLFS  420
AAASSGFPSS TATSSSSAVT QLHFPNTAIL HHHFSPSFTN NIPHFYCRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369704.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-98AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM5VY070.0M5VY07_PRUPE; Uncharacterized protein
STRINGGLYMA19G36200.21e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-99related to AP2.7