PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000197375
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 220aa    MW: 24809.2 Da    PI: 9.2816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000197375genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-173281255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a+++a++ l+g
  MDP0000197375 32 RFLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDQAEEAALAYDKAARLLRG 81
                   577******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.55E-313189No hitNo description
PROSITE profilePS5103219.9413289IPR001471AP2/ERF domain
SMARTSM003804.5E-323295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-283290IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-193389IPR016177DNA-binding domain
PRINTSPR003676.0E-73344IPR001471AP2/ERF domain
PfamPF008471.2E-103581IPR001471AP2/ERF domain
PRINTSPR003676.0E-75571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDSSSVSQPI QTHTFQENKK KNMRKGNKNG KRFLGVRQRP SGRWVAEIKD SSQKLRLWLG  60
TFDQAEEAAL AYDKAARLLR GRNAKTNFPS CHTLNTHEEN CSILRKNPRL YQFLQHAIMK  120
NHARSSSLNS AKIXPWDRNQ IRGIDFDILV EETIVCSSSG AATTSGQDHG DHDEDRNKKL  180
CALSFGSCKV YSSVVVAPSF SASSQCQQXH DEEEKGYQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-163089363ATERF1
3gcc_A7e-163089363ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.73840.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393384.31e-165ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A498I3A31e-146A0A498I3A3_MALDO; Uncharacterized protein
STRINGXP_008393384.11e-146(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-15related to AP2 11