PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000194766

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 168aa MW: 18781.5 Da PI: 6.8581

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000194766	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+Ck+lrr+CakdC++ap fp+++p+kfanvhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+ MDP0000194766 6 PCASCKLLRRRCAKDCIFAPFFPSDDPHKFANVHKIFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSELQMQLAV 101 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MDP0000194766 102 AQAE 105 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MAGTSPCASC KLLRRRCAKD CIFAPFFPSD DPHKFANVHK IFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIK MQHEPMVPPQ 120 QIMDGPDDQK SYFLHNNNLA QYLSFPPSSN VIHDSLNREN IFGHDMVS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009345367.1	1e-123	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	3e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	M5X1C1	5e-99	M5X1C1_PRUPE; Uncharacterized protein
STRING	POPTR_0010s19180.1	4e-95	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-75	LBD family protein

Link Out ? help Back to Top
Phytozome	MDP0000194766