PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000194766

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 168aa MW: 18781.5 Da PI: 6.8581

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000194766	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+Ck+lrr+CakdC++ap fp+++p+kfanvhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+ MDP0000194766 6 PCASCKLLRRRCAKDCIFAPFFPSDDPHKFANVHKIFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSELQMQLAV 101 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MDP0000194766 102 AQAE 105 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MAGTSPCASC KLLRRRCAKD CIFAPFFPSD DPHKFANVHK IFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIK MQHEPMVPPQ 120 QIMDGPDDQK SYFLHNNNLA QYLSFPPSSN VIHDSLNREN IFGHDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-48	5	107	10	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-48	5	107	10	112	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028957891.1	1e-123	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	4e-73	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A498KMN3	1e-122	A0A498KMN3_MALDO; Uncharacterized protein
STRING	XP_009345367.1	1e-122	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-75	LBD family protein

Link Out ? help Back to Top
Phytozome	MDP0000194766

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]