PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000191541
Common NameHSF1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 414aa    MW: 46878.8 Da    PI: 4.5486
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000191541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.35.7e-34221132102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k ye+++d++ +++iswse g+sf++ld+ +f+ ++LpkyFkhsnf+SF+RQLn+YgF+k++ ++         w F+++ F +g+k+ll++i
  MDP0000191541  22 FLRKCYEMVDDKDSDSIISWSEAGDSFAILDMAQFSISMLPKYFKHSNFSSFMRQLNIYGFRKIDPDR---------WVFANEGFIRGQKHLLKNI 108
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                     r+k+
  MDP0000191541 109 ARRKH 113
                    **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3518111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-5118111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-3318111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-2922111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MVKSAEKGGG DGSGPSGSVP PFLRKCYEMV DDKDSDSIIS WSEAGDSFAI LDMAQFSISM  60
LPKYFKHSNF SSFMRQLNIY GFRKIDPDRW VFANEGFIRG QKHLLKNIAR RKHPQGTDQK  120
KILQQKDNPD IPSENISENG LWKEVENLKT DKVALKQELV KLRQHQEISQ NKLLLLRNRL  180
RGMEKNQQQM LSFLVMAMQS PGFLVQLLHP KENSWRIAEA GNIIEQCMDD DRPVASDGAI  240
VRYQPPMIEA PKPLVPPNSG SEKQPEVDAY MDGMEDFVVN PDFMKMLMDE KLSPVETHAP  300
YTLPDISDDG AWEQFLLASP FLENIEGTKE DGEEPADARM EVEPIVSDLD ESQNFDYLVE  360
QMKKSQNFAS DSTVDGSNME SSQNLEFITE QMGHLASDSN NMEQNQGSRR TTSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26911117129Heat shock factor protein 1
5d5v_B2e-26911117129Heat shock factor protein 1
5d5v_D2e-26911117129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.23570.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281294.10.0heat shock factor protein 1
TrEMBLD9ZJ250.0D9ZJ25_MALDO; HSF domain class transcription factor
STRINGXP_008381767.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.12e-91heat shock transcription factor A8