PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000190889
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 648aa    MW: 71240.9 Da    PI: 7.3573
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000190889genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.2e-12291347155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  MDP0000190889 291 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 347
                    789******************77776664346655.77******************98 PP

2AP250.64.9e-16392441355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  MDP0000190889 392 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 441
                    9***************988532...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-14291357IPR016177DNA-binding domain
CDDcd000181.60E-18291355No hitNo description
SMARTSM003802.4E-21292361IPR001471AP2/ERF domain
PfamPF008474.7E-9292347IPR001471AP2/ERF domain
PROSITE profilePS5103216.871292355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-12292356IPR001471AP2/ERF domain
PRINTSPR003677.6E-6293304IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17390450IPR016177DNA-binding domain
CDDcd000188.51E-25390451No hitNo description
PROSITE profilePS5103218.979391449IPR001471AP2/ERF domain
SMARTSM003801.1E-32391455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-18391449IPR001471AP2/ERF domain
PfamPF008478.8E-11392441IPR001471AP2/ERF domain
PRINTSPR003677.6E-6431451IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MKSMNDHNNN NNGSSNSNNX NWLGFSLLPH MKMEAAASSS SSATLPSNSS FYNLSSSGLC  60
CYGVGENGNF HYSPLSAMPL RSDGSLCIME ALSRSQTGMM PNTSPKLEDF LGGAAHDYVS  120
EEREAMALSL DSYYNAEAEQ QQNHHIPLHS SSYYSGIPIQ GIYQTQLEEE HSKNTQMTQI  180
PEDLKTCWVS RQYSAHPALE HHHMNNVTMV DDSGGSGSIN GGMNRGDLQS LTLSMSPGSQ  240
SSCVTAPRQI SPTQTECAVA VIETKKRGCG KLGQKQPVHR KSIDTFGQRT SQFRGVTRHR  300
WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGSST HINFPLDNYA  360
AQLEEMKNMS RQEYVAHLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  420
TFGTQEEAAE AYDIAAIKFR GANAVTNFDI TKYDVEKIMS SNTLLAGEFA RRAKVIEPNI  480
AAPAIEYNPP TQNNAEVNQP EINNGNSLDW KMALYQSAAQ QQADSCVQTL DQKSVGSVSY  540
RNLSFSMALE DYIGVESAHS SQTMMDETAR VGPHFSNPSS LVTSLGSSRE ASPDKSGSNM  600
MFAKPPLASK FVSPTSAATV SSWFPSAQLR PAAISMSQLP LFAAWNET
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.216490.0bud| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380100.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-160ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLM5XJF30.0M5XJF3_PRUPE; Uncharacterized protein
STRINGVIT_18s0001g08610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-152AP2 family protein