PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000172931
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 585aa    MW: 63825.3 Da    PI: 6.2978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000172931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000336989323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C+ Cgk Fs+   L  H+r H
  MDP0000172931 69 CEVCGKGFSSGKALGGHMRIH 89
                   *******************99 PP

2zf-C2H2171.6e-05143164223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C  Cgk F++  +L  H+r+H
  MDP0000172931 143 VCCVCGKNFPSMKSLFGHMRSH 164
                    6********************9 PP

3zf-C2H210.70.0017412434123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C k+F+++  L  H+++H
  MDP0000172931 412 YKCNLCVKCFPSHQALGGHMSSH 434
                    9********************99 PP

4zf-C2H214.30.00012479501123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k+F++   L  H r+H
  MDP0000172931 479 HQCKICNKTFPTGQALGGHKRSH 501
                    79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.156789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2216794IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-86889No hitNo description
PfamPF139121.1E-66989IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-56989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-8137164No hitNo description
SMARTSM003550.092142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349142169IPR007087Zinc finger, C2H2
PfamPF139122.7E-6144166IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
PfamPF139124.5E-6411435IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076412439IPR007087Zinc finger, C2H2
SMARTSM003550.034412434IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.37E-5412434No hitNo description
PROSITE patternPS000280414434IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-5474501No hitNo description
PfamPF139125.0E-13478502IPR007087Zinc finger, C2H2
SMARTSM003550.0081479501IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806479501IPR007087Zinc finger, C2H2
PROSITE patternPS000280481501IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDIQHKETRF PPLAARYQEP TPAKKPSREE MENNNGGLFL ELKVAKPEPL DQNPQNSSAX  60
PRPQFTRFCE VCGKGFSSGK ALGGHMRIHI QADRELFNQS XKNMISSKPK ISKPNNSDVG  120
SSNAGGVVGI GGNSNSISDX KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPAAKN  180
SSSSTLSDAV PDQSEKKDQD GQIDSDEMFF ASKSSALDLS KTLPKWSQTA RRGRKSGSTG  240
LESNSDQSVS GLDSRSPRTV EEDEEQMKEA VHDLLLLAQA NPLEGGGADD TMCEATNSNF  300
LITANQDGEX GLPCHGYTAT ATVGSTNKRK GSPSEVERSE KKWYDEYGGG FGQEKSTVKN  360
FLKLGLMEEE NIGNHNNMED ELSDSQNSES IAVMRRNRRK MKLVDLEGRL RYKCNLCVKC  420
FPSHQALGGH MSSHNKLKGI AVAHPSMEDQ SAPADVSXGE DRVHDDEAER VALDHQQHHQ  480
CKICNKTFPT GQALGGHKRS HWNGPTEQHQ QQVVEGPPEQ LQQQLQAQSS QNIAGVGGGR  540
RVLDFDLNEL PPMEEDDQQG EGVGYQYGGA AAAGCAPSSY NSVSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500766.10.0PREDICTED: hypermethylated in cancer 2 protein
TrEMBLA0A498IT110.0A0A498IT11_MALDO; Uncharacterized protein
STRINGXP_008384635.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.13e-19C2H2 family protein