PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000165880
Common NameDREB2-2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 572aa    MW: 62456 Da    PI: 4.8984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000165880genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-1779129155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  +g+WvAeIr+p     r  r +lg+f ta +Aa a+++a+k+++g
  MDP0000165880  79 CNYRGVRQRT-WGKWVAEIREPD----RgSRLWLGTFPTAVDAALAYDEAAKAMYG 129
                    56*****999.**********82....34************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-2979139No hitNo description
PfamPF008472.4E-1279129IPR001471AP2/ERF domain
SMARTSM003801.3E-3580143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2980138IPR001471AP2/ERF domain
PROSITE profilePS5103221.06180137IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1980138IPR016177DNA-binding domain
PRINTSPR003673.7E-98192IPR001471AP2/ERF domain
PRINTSPR003673.7E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGAYDQGVNM PSLPLDSSRK RKTRSRRDGN SVADTLEKWK EHNKQLESAT EEGKKRKVPA  60
KGSKKGCMKG KGGPENARCN YRGVRQRTWG KWVAEIREPD RGSRLWLGTF PTAVDAALAY  120
DEAAKAMYGD GARLNLPHAV NNHPSSSQET SSVATPSGSS AAATPGCSTS TSTSSLSEVC  180
ADENSKLFLD VKKEDGEGES RMYPLSGAVP QASGMVKQEV NEDFDMDYLR NNQQQPVGMV  240
KPEVNEVFDM DYLRNNQQQR GVEDHNPNGG DGFVGDYSEN FTMGELFDMD EMFDVNELLM  300
PPDDISLCNS GPEQVSRPDV GQPGMETLSS EGPSNLSYQL QYPDAKLLGS LPHMEQAPLD  360
FEYSFDFMKQ EEGSNLTSQN DQGYFNLGPS DLGLGGFTEV ELVNATEGSF DIAFRNIRMF  420
KDVGWIPPHQ LGFHGGVSLL HSFGAFRFGG SAWFGSLAHS SSWGSTWLER LGATRLVAAL  480
LGSALAWTLK FHCLDFAGDL GLSASVPLLL SCSSDLSRCS LVPVALVHRG DAGVLANLVL  540
AFVCCYCESR RLTMTLLWSR TFAMILCGLV IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1880142568ATERF1
3gcc_A5e-1880142568ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKT
22027RKTRSRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302130.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698170.0JQ669817.1 Malus x domestica dehydration-responsive element-binding protein (DREB2) (DREB2-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280947.10.0dehydration-responsive element-binding protein 2A
TrEMBLI1Z6740.0I1Z674_MALDO; Dehydration-responsive element-binding protein (DREB2) (Fragment)
STRINGXP_008369293.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.24e-35DRE-binding protein 2A
Publications ? help Back to Top
  1. Zhao T,Liang D,Wang P,Liu J,Ma F
    Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress.
    Mol. Genet. Genomics, 2012. 287(5): p. 423-36
    [PMID:22526429]