PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000161347
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 165aa    MW: 18729.2 Da    PI: 7.8214
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000161347genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.4e-1290130952
            AP2   9 dkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                    +++ grW A+I      g  +k+ +lg+fgt eeAa+a++ a+ k
  MDP0000161347  90 HHQHGRWQARIGR----GtGNKHLYLGTFGTQEEAAEAYDMAAIK 130
                    7889******999....4447*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.481166IPR001471AP2/ERF domain
SMARTSM003800.00191972IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-83168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-73166IPR001471AP2/ERF domain
PROSITE profilePS5103212.58976145IPR001471AP2/ERF domain
SMARTSM003806.3E-989149IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1189139IPR016177DNA-binding domain
PfamPF008476.2E-890130IPR001471AP2/ERF domain
CDDcd000181.90E-1391139No hitNo description
Gene3DG3DSA:3.30.730.101.4E-1091131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MHAEDWDLGK FWKFMAGLSI GVGNLVVLRI KVRIRSGGYD MEEKAARAYG LAALKYWGSS  60
THINFPLDIY AAQLEEMKNI SRQEYVAHLH HQHGRWQARI GRGTGNKHLY LGTFGTQEEA  120
AEAYDMAAIK CPRTTPTSNP TMDYQTADSE HVLKRSRPFE VTDEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355784.11e-120PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ389141e-44ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A124SGL01e-48A0A124SGL0_CYNCS; AP2/ERF domain-containing protein
STRINGPOPTR_0002s11550.11e-45(Populus trichocarpa)
STRINGGLYMA0041S50.18e-46(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.18e-46AP2 family protein