PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000160924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 288aa    MW: 33181.4 Da    PI: 9.1758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000160924genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.15.8e-2438120186
       trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W  +e+++Li++r e+e r +  +k+ kp+We+vs+km ergf+r+p+qCk+kw+nl  ryk  ++++ +    s ++cp+f++l+
  MDP0000160924  38 QWASEETRELIAIRGELEIRDSVvSKRSKPQWEAVSSKMTERGFNRTPEQCKCKWKNLLIRYKGKETSDPE----SGRECPFFEELH 120
                    7*****************9988648899************************************9999997....4667******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.6063196IPR017877Myb-like domain
SMARTSM007178.4E-43598IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-63797IPR009057Homeodomain-like
PfamPF138372.5E-2338121No hitNo description
SuperFamilySSF466899.4E-638121IPR009057Homeodomain-like
CDDcd122031.44E-1838103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MYGGGGDEEA SVGLRGGGGG GGGGMMKMMI SSPTGAGQWA SEETRELIAI RGELEIRDSV  60
VSKRSKPQWE AVSSKMTERG FNRTPEQCKC KWKNLLIRYK GKETSDPESG RECPFFEELH  120
AVFTERAKNM QRLLLESEAG SARPKKLVKR KSRSGQWSDE LSEDAEEEDS HGKGKKRKGE  180
GVVLARATNP ASGSSTSSVQ ELLKEFFQHQ QRMEMEWRQM MEKRALERRL FEEEWRQKME  240
KTERERLMVE QAWREREEER RIREESRAER RDALLTTLLN RLINQTNF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.145082e-44leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373496.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLM5WBE21e-118M5WBE2_PRUPE; Uncharacterized protein
STRINGGLYMA01G35370.29e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-32Trihelix family protein