PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000159122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 108aa    MW: 11569.6 Da    PI: 10.6731
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000159122genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.11.1e-2723108185
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                    +C  Ck+lrrk  ++C++ pyf + + +++f ++hk+FG+snv kll ++p ++ +da+ +++yeA+ar+++Pv G+v++il+lqq
  MDP0000159122  23 PCGTCKFLRRKYISECIFTPYFGSVRgAARFVAMHKVFGTSNVPKLLLHIPSNRLHDAVVTITYEAQARLSNPVAGCVSTILALQQ 108
                    7*********************998879*******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.27722108IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-2823108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MKAAVRTTKI TGNVVGSSSG AAPCGTCKFL RRKYISECIF TPYFGSVRGA ARFVAMHKVF  60
GTSNVPKLLL HIPSNRLHDA VVTITYEAQA RLSNPVAGCV STILALQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2517108595LOB family transfactor Ramosa2.1
5ly0_B4e-2517108595LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391783.12e-57LOB domain-containing protein 20
SwissprotQ9SRV32e-44LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A498I2L33e-51A0A498I2L3_MALDO; Uncharacterized protein
STRINGXP_008391783.18e-57(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-47LOB domain-containing protein 20