PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155667
Common NameHSF4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 276aa    MW: 30968.9 Da    PI: 5.9498
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155667genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.4e-36261182103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y++++d++++++isw+++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i
  MDP0000155667  26 FLIKTYQLVDDPSINDVISWNDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVGLDR---------WEFANDCFQRGQKRLLCEI 112
                    9****************************************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r++s+
  MDP0000155667 113 QRRRST 118
                    ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3823115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.78E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAPTPVEPNG ESTSGESLQR ALPTPFLIKT YQLVDDPSIN DVISWNDDGS SFVVWNPTVF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVG LDRWEFANDC FQRGQKRLLC EIQRRRSTPL  120
APPVASAWAV PAAKPMMSPS NSGDEQVISS SSSPNGAPSK LMQENERLRK ENMHLTKELA  180
EVKTLCNSIF SMVSNYACSQ WESGFPELKP LDLIPGKRFS VKGEKEEEEE ARLKLFGVAL  240
GAKRAREASA DGVEEDETDL RLQPSERLLV GSYGRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-242611529129Heat shock factor protein 1
5d5v_B1e-242611529129Heat shock factor protein 1
5d5v_D1e-242611529129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138800.0bud| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281281.10.0heat shock factor protein 4
SwissprotQ9SCW43e-79HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLD9ZJ280.0D9ZJ28_MALDO; HSF domain class transcription factor
STRINGXP_008377312.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-78heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]