PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000151330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 335aa    MW: 36899 Da    PI: 8.9407
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000151330genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.41.3e-292103197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l+p +     p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q++
  MDP0000151330   2 SCNGCRVLRKGCSDSCMLRPSLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTINPVNGAVGLLWTGNWHVCQAA 97 
                    6*********************************************************************************************** PP

         DUF260  92 aelall 97 
                    +e++l 
  MDP0000151330  98 VETVLX 103
                    998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.411107IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCMLR PSLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PVLFQSLLFE ACGRTINPVN GAVGLLWTGN WHVCQAAVET VLXGGTLRPI PELLGGASTP  120
DEASEADVGG VTISTDMWRL RDPSHNSGSS SRFTSSRSAR ASSPKRKRSA AXDESSTKLL  180
QPQQHADLDL RLTPTPSFKP KPKPETRRPG TPSMNSDESG VSTCFESGFE DQHPYSFILT  240
GHKPKXXXEQ AERNSHGTKK QRGNNPKTKP NPPRERRREX LEPKEQQHSN NGCGREAGRE  300
FLFGLVLLPS SLTPPQLAYN ELDQTLLPIN YYQPF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.54530.0bud| flower| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338422.21e-172LOB domain-containing protein 37-like
SwissprotQ9SN237e-80LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A498I0N01e-170A0A498I0N0_MALDO; Uncharacterized protein
STRINGXP_008338422.11e-171(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-74LOB domain-containing protein 38