PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000150055
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 366aa    MW: 40099.9 Da    PI: 7.3712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000150055genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088155177123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  MDP0000150055 155 YECKTCNRTFPSFQALGGHRASH 177
                    99**********99999998887 PP

2zf-C2H2130.00031245267123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  F++   L  H+r+H
  MDP0000150055 245 HECSICGAEFTSGQALGGHMRRH 267
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.6E-13154179IPR007087Zinc finger, C2H2
SuperFamilySSF576676.84E-9154177No hitNo description
PROSITE profilePS5015710.388155182IPR007087Zinc finger, C2H2
SMARTSM003550.052155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576676.84E-9240267No hitNo description
SMARTSM003550.01245267IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-12245269IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723245267IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEAAGGDHHH QEDVMILGCK EQHSNNINIM KGKRTKRLRP QSPIPFAIPT NSSSPEGGTS  60
RGGGDGGENN NDCINSTNLS PTTSAELFQD STSEEEDMAN CLILLAQGQS RAASSSPNHH  120
HQPPNDHITT TSRKFLEATT VTAGKAAGAA GYYVYECKTC NRTFPSFQAL GGHRASHKKL  180
KANIGDDHKN KHLGIGXLPP SDEDQDTQSL KDNIFHINTS SSPLSLHLSN RGLVLSSNKS  240
SPKIHECSIC GAEFTSGQAL GGHMRRHRAP IGATNTTLSL TPPPVSAAFE SHQQQXKHQQ  300
QQPQLPMKKQ KSMLNLDLDL NLPAPSEDDH HKETKFVFAS NQQQQQQQEQ QQQERLRTQI  360
LVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376265.20.0zinc finger protein ZAT5-like
TrEMBLA0A498JER90.0A0A498JER9_MALDO; Uncharacterized protein
STRINGXP_008376265.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-41C2H2 family protein