PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139025
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 215aa    MW: 23786 Da    PI: 7.6418
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139025genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.72.1e-292103197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG+s + ++++a++e++r+++++sl++eA  r+ +Pv+Ga+g++l+++++++q++
  MDP0000139025   2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRSGLFSFINAVSESQRPALFQSLIFEAVGRTINPVNGATGLLLSGKWDVCQAA 97 
                    6**********************************************************************************************9 PP

         DUF260  92 aelall 97 
                     e++l+
  MDP0000139025  98 IETVLR 103
                    998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.731107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRSGLFS FINAVSESQR  60
PALFQSLIFE AVGRTINPVN GATGLLLSGK WDVCQAAIET VLRGGALEPL PEYIRDNHYV  120
REHQVRVEQR QSTKKKRPNF AVDDIEDDVA NFQPPDLNLC LTSAAGLTSM TKRRDCRAAT  180
PSVEDSETTT LGSSSSENNC TAGNLERTKL LRLFI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382222.11e-160LOB domain-containing protein 38-like
SwissprotQ9SN232e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A498IYM81e-145A0A498IYM8_MALDO; Uncharacterized protein
STRINGXP_008382222.11e-160(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-64LOB domain-containing protein 38