PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 577aa    MW: 63810.7 Da    PI: 6.9399
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.7e-17181230155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MDP0000137561 181 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 230
                    78*******************......55************************997 PP

2AP240.85.3e-13301351155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ +Aa+a+++a+ k +g
  MDP0000137561 301 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVDAARAYDKAAIKCNG 351
                    89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-9181230IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-15181239IPR016177DNA-binding domain
PROSITE profilePS5103217.701182238IPR001471AP2/ERF domain
SMARTSM003807.5E-32182244IPR001471AP2/ERF domain
CDDcd000186.44E-11182237No hitNo description
Gene3DG3DSA:3.30.730.106.8E-17182238IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17301361IPR016177DNA-binding domain
PfamPF008472.7E-8301351IPR001471AP2/ERF domain
CDDcd000182.54E-24301361No hitNo description
PROSITE profilePS5103215.303302359IPR001471AP2/ERF domain
SMARTSM003809.8E-32302365IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-16302359IPR001471AP2/ERF domain
PRINTSPR003676.0E-6303314IPR001471AP2/ERF domain
PRINTSPR003676.0E-6341361IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MWDLNDSPDQ RPRGEESEGC SSQKTSADGD EEKRKRVGSV SNSSSSAVVI EEDGSDQEED  60
QDDGPTKLAK KQGGGGGKIF GFSVAHEESM DSDPPATVTR QFFPVELDYS SSSNLDVMGP  120
AEGGGSIPPP PSTSSSFPRA HWVGVNFGQS DSGSPGNPPP AGEASHQPMK KSRRGPRSRS  180
SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSIE  240
DYEEDLKQIQ NFGFLGMNYD VNVVFLAWNG TLNHKKMRNL TKEEFVHVLR RQSTGFPRGS  300
SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEVDAAR AYDKAAIKCN GKEAVTNFDP  360
SIYDNELNSS ESSGVIAADH NLDLSLGSTN SKKNNQALGN DHHSQNVAME HQHSVSMQLD  420
ADWRSQGLRP KLNIQRDRSR DDIDAQRRDG YSESEAMQLL LRTNLQSQAP AEVHKYGQFS  480
RRPTAGDIQM SHNFPPNFNS PNYHHIQFPS SSEGGGRIGS DLSLSTSDHQ QQWQSATPTS  540
NLFATAAASS GFPPQLRPXP TQNSWLQKNG FHTLARR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29680.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9836660.0GU983666.1 Malus x domestica apetala 2-like protein mRNA, complete cds.
GenBankGU7324640.0GU732464.1 Malus x domestica AP2 domain class transcription factor (AP2D40) mRNA, complete cds.
GenBankKC4152390.0KC415239.1 Malus domestica cultivar Fuji Beni Shogun AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382290.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotP479271e-120AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLQ8VWW80.0Q8VWW8_MALDO; Transcription factor AHAP2
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-108AP2 family protein