PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000136037
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 305aa    MW: 32676.7 Da    PI: 8.211
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000136037genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.22e-3141081100
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++
  MDP0000136037   4 SCNGCRILRKGCSENCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAA 99 
                    6*********************************************************************************************** PP

         DUF260  92 aelallkee 100
                    +e++l +++
  MDP0000136037 100 VEAVLKGQP 108
                    **9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.1E-951300IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1153109IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQPIT PITSEAAAXG  120
HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSVVK PKTNKVGSGS GSGCGSGADD  180
SAKPSCTGXC GNEFNRSTSH ESSLSHQSEV AANVDGDSKE SESMISSETA EAELFSRAEP  240
XSARKXREPX QDGELALELT LGLEPPSRAH HVVPVKKRRI EAEFGSLSSA GDGACKMELG  300
LDFVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.51820.0bud| cell culture| fruit| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348114.20.0LOB domain-containing protein 41-like
SwissprotQ9M8861e-111LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A498J7N00.0A0A498J7N0_MALDO; Uncharacterized protein
STRINGXP_008348114.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-98LOB domain-containing protein 41