PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135374
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 116aa    MW: 13216.6 Da    PI: 10.2237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135374genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.84.6e-1957654128
            NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrap.kgektdWvmheyrl 128
                    e k+wyf+s+r+        +nr+t++gyWk+ g +++++s+     +++vg+kk L+f+ g+ap +g kt+W+mheyrl
  MDP0000135374   5 EGKQWYFYSRRA--------QNRVTNNGYWKTLGIEEPIFSSsssnPTKKVGMKKYLTFFVGEAPnSGIKTNWTMHEYRL 76 
                    6789****9985........589******************966655566**********997762589*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.746198IPR003441NAC domain
SuperFamilySSF1019411.83E-21481IPR003441NAC domain
PfamPF023657.5E-12976IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
KALSEGKQWY FYSRRAQNRV TNNGYWKTLG IEEPIFSSSS SNPTKKVGMK KYLTFFVGEA  60
PNSGIKTNWT MHEYRLSSSA SDCASSSTTT TTSRSSKRRG QSNTVSNACH HHYYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-1517665142NO APICAL MERISTEM PROTEIN
1ut4_B2e-1517665142NO APICAL MERISTEM PROTEIN
1ut7_A2e-1517665142NO APICAL MERISTEM PROTEIN
1ut7_B2e-1517665142NO APICAL MERISTEM PROTEIN
4dul_A2e-1517665142NAC domain-containing protein 19
4dul_B2e-1517665142NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.153121e-175fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357603.11e-71NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK64e-25NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A498HUI23e-64A0A498HUI2_MALDO; Uncharacterized protein
TrEMBLD9ZJ882e-68D9ZJ88_MALDO; NAC domain class transcription factor
STRINGXP_008357603.14e-71(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-27xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]