PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000133936
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 218aa    MW: 24368.3 Da    PI: 4.39
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000133936genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.8e-3871071100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+++C++apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+v+ i +lqqq++ l++e++
  MDP0000133936   7 SCGACKFLRRKCTSECIFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITMSYEALARMRDPVYGCVSQIYALQQQVAYLQEEIE 102
                    6************************9789******************************************************************9 PP

         DUF260  96 llkee 100
                    +l+++
  MDP0000133936 103 TLGSQ 107
                    99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.9146108IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAGLGSSCGA CKFLRRKCTS ECIFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITMSY EALARMRDPV YGCVSQIYAL QQQVAYLQEE IETLGSQMVD FATCHPSNSN  120
TFVDQLQVFS QHDAVDTQHI QNQLPESPIF PHIGSAAANQ GFNGEMDIEM PPLQEWEEVN  180
LFGDHSTPDP LKRFLEGMEQ DNLGNNPWPN ETATWDLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3531127115LOB family transfactor Ramosa2.1
5ly0_B4e-3531127115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352160.11e-165LOB domain-containing protein 33-like
SwissprotQ9LHS83e-56LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A498KMD21e-164A0A498KMD2_MALDO; Uncharacterized protein
STRINGXP_008352160.11e-165(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-58LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]