PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130524
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 147aa    MW: 16687.8 Da    PI: 10.6695
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130524genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP80.73.9e-2585142259
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpai 59 
                     g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +   ++
  MDP0000130524  85 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDDDHNQV 142
                    689************************************************8866655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136924.67987145IPR017887Transcription factor TCP subgroup
PfamPF036348.0E-2487145IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MGXERYYQLA KNLAIIGCRK LENGLPEGGE EHQKHSGGRL WSSTTSRECV AREANKISSN  60
PNLSRSSTLW PRLKDPRIVR ASRAFGGKDR HSKVCTIRGL RDRRVRLSVP TAIQLYDLQE  120
RLGLNQPSKV VDWLLDDDHN QVRLLPG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.163241e-118fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010673e-47KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348175.11e-104PREDICTED: transcription factor TCP13-like
SwissprotQ9S7W51e-37TCP13_ARATH; Transcription factor TCP13
TrEMBLM5WST02e-42M5WST0_PRUPE; Uncharacterized protein
STRINGPGSC0003DMT4000034532e-40(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-39plastid transcription factor 1