PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000123808
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23583 Da    PI: 7.0845
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000123808genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.8e-091352150
                   HHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS
         SRF-TF 21 lKKAeELSvLCdaevaviifsstg.....klyeys 50
                   +KKA+E S+LC+ +v++ i ++++     +l++++
  MDP0000123808  1 MKKAYEFSTLCELDVCMTICGPKQtgrppELHTWP 35
                   8********************99833444477776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-6153IPR002100Transcription factor, MADS-box
PfamPF003191.2E-5124IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKKAYEFSTL CELDVCMTIC GPKQTGRPPE LHTWPENQNE TKVYVDTYRA RKEMYEAKYP  60
TWDERIESLS ENRLEALLNS LDAKLESGKR TLLHKRNQSA EHYQHICSSS QSRPCNYYKQ  120
DQVNHQEEDK KPMMICSSLL IIIIIIIISS LLIESIVQMN ILSNLLSTLQ LSVGPSSSNS  180
ELPFEGQHIN FNNPMMIQKR WRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354940.26e-65agamous-like MADS-box protein AGL3
TrEMBLA0A498J4331e-126A0A498J433_MALDO; Uncharacterized protein
STRINGXP_008358205.11e-150(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-10M-type_MADS family protein