PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000123797
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 216aa    MW: 24303.4 Da    PI: 4.872
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000123797genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-3871071100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+k+l +lp ++r+da+ ++ yeA ar++dPvyG+v+ i++lqqq++ l++e++
  MDP0000123797   7 SCGACKFLRRKCTSECVFAPYFCYDQaADHFAAVHKVFGASNVSKMLLHLPVQHRSDAAITMSYEALARMHDPVYGCVSQIFALQQQVAYLQEEIE 102
                    6************************9789******************************************************************9 PP

         DUF260  96 llkee 100
                    +l+++
  MDP0000123797 103 TLGSQ 107
                    99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.296108IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTGLGFSCGA CKFLRRKCTS ECVFAPYFCY DQAADHFAAV HKVFGASNVS KMLLHLPVQH  60
RSDAAITMSY EALARMHDPV YGCVSQIFAL QQQVAYLQEE IETLGSQMVN FTTCHPSNSS  120
NTFTDQLQVL SQNGAEHIQN QLPELPIFPH IGTAAANQGF NSEMDIEMPP VHEWEEVKLF  180
GDHFTPDPLK RFLEGMEQDM LGNNPWSNET ATREFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3431127115LOB family transfactor Ramosa2.1
5ly0_B8e-3431127115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372823.11e-164LOB domain-containing protein 33
SwissprotQ9LHS81e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A498JF691e-163A0A498JF69_MALDO; Uncharacterized protein
STRINGXP_008372823.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.15e-57LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]