PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000122728
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 665aa    MW: 73455.9 Da    PI: 5.2882
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000122728genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-0893145156
            AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    s ++GV+++   gr+ A ++d +e     k+   g f+ +e+Aa+a++ a++kl+ge
  MDP0000122728  93 SVFRGVSRHT-EGRFQAFVWDGTEpE---KKGKTGGFDKEEDAARAHDLAALKLWGE 145
                    689****998.8******99965432...5555688******************997 PP

2AP232.12.9e-10187235152
            AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                    s y+GV++ + +++W A++      g ++   +lg+f t+e+Aa+a++  + +
  MDP0000122728 187 SNYRGVSRISGKKKWQARLGR----GkRHNGLYLGTFETEEQAARAYDIGAIR 235
                    57****************666....54459******************87766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-1493153IPR016177DNA-binding domain
PfamPF008471.8E-493145IPR001471AP2/ERF domain
CDDcd000182.99E-1593152No hitNo description
Gene3DG3DSA:3.30.730.103.0E-1394153IPR001471AP2/ERF domain
SMARTSM003807.3E-1394158IPR001471AP2/ERF domain
PROSITE profilePS5103215.19894152IPR001471AP2/ERF domain
PRINTSPR003674.3E-595106IPR001471AP2/ERF domain
PRINTSPR003674.3E-5134154IPR001471AP2/ERF domain
PfamPF008475.6E-6187230IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-13187248IPR016177DNA-binding domain
CDDcd000186.56E-17187248No hitNo description
Gene3DG3DSA:3.30.730.107.4E-15188247IPR001471AP2/ERF domain
SMARTSM003805.9E-17188252IPR001471AP2/ERF domain
PROSITE profilePS5103216.133188246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MQPQSPSILE SALFETPNYD SFSFLNNPFS SSRPLECDTG LIGENYGKNN AVKIFGGPLM  60
SINEDNKGCT SPMNRQRRHP HQNSKHTIGN KKSVFRGVSR HTEGRFQAFV WDGTEPEKKG  120
KTGGFDKEED AARAHDLAAL KLWGECAKLN FPXEXYKKDL EEMQTMTKQD YFLXIRRASP  180
SFAKGLSNYR GVSRISGKKK WQARLGRGKR HNGLYLGTFE TEEQAARAYD IGAIRTKGTD  240
AATNFDVSEN DVNSILQSEK LPIGEGASKS LKFASSVDDF IQSRRKTNKK TPFLQPYEDH  300
RLGILNRIST QPSSSFQQTT LQTLPIYPND SNCSQYVDPF LQDFQNTDNI QNNQLLQYYS  360
VSPRXQVQXV PAGYQNANFE TNRIFSHWDG NTYGGGNNSV GSAINIGPVI PSQNHELNQF  420
QYYNNDAYGQ KLSQNPNSSY LLQNSHVSAY PQTISPTFLP GLNNLHTCSS YIGECSSSQA  480
EVSLDTILGE TDESLGSDIV SEVVPVADLE VHVNPIERNS ISVLPEDREN GSTGYQNANF  540
ETNPIFSHXD GNTDGRGDNS VGSAINIGPV IPSQNHELNX FQYYNNDAYG QKLSQNPNSS  600
SQAEMSLDTI LGETDGSLGS DMVSEVAPVA DLEVHVNPIE RNSVLPGDRE NGSVVEVSGV  660
SKSGH
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1650648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.14e-55AP2 family protein