PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000121984
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 509aa    MW: 55514.8 Da    PI: 9.0477
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000121984genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11130186155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  MDP0000121984 130 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 186
                    57*******************5444.2455536655.779999**************98 PP

2AP247.35.3e-15229280155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MDP0000121984 229 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 280
                    57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-9130186IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15130195IPR016177DNA-binding domain
CDDcd000181.04E-18130195No hitNo description
SMARTSM003807.2E-23131200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-12131194IPR001471AP2/ERF domain
PROSITE profilePS5103217.477131194IPR001471AP2/ERF domain
PRINTSPR003672.1E-6132143IPR001471AP2/ERF domain
PfamPF008476.6E-10229280IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18229290IPR016177DNA-binding domain
CDDcd000181.51E-24229290No hitNo description
SMARTSM003801.5E-33230294IPR001471AP2/ERF domain
PROSITE profilePS5103219.045230288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18230289IPR001471AP2/ERF domain
PRINTSPR003672.1E-6270290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
TVAGHHHQGA SPTSATDLSI FSSGINGPKL EDFLGGCTPA ANTVTPTSLP QFATADHHHQ  60
ITPLALSQNE IYDSELKTIA ASFLRGFSTT ATTTTTAATL QTTKLQNHHP LASSDPTPKK  120
PADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQGGYDKE EKAARAYDLA  180
ALKYWGPTTT TNFPVINYEK ELSEMKNMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH  240
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIASS  300
NLPIGGMSGK SKNSSDSDSK SIEGNRSADD RDLSSASSVT FASQQPSSST LSFAIPLKQD  360
PSSDYWSNIF GYNPSQNNTK NPTTVSVAPS SSLFQSRAIG SYGNNSSPIP FNMDFSSTFS  420
TSASETNNGY FGNFNIDGQQ HQEQLQHHQH EQSTITGSGS IPFATPIASN SNNGYETSSG  480
YGSWIAPSIH TFQTHAKTNL FQTPIFGME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360516.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5, partial
SwissprotQ6PQQ31e-152AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM5XMV70.0M5XMV7_PRUPE; Uncharacterized protein
STRINGGLYMA13G00950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-139AINTEGUMENTA-like 5