PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP16890_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 237aa    MW: 26690.8 Da    PI: 5.4922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP16890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-1278120754
                                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                    ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  GSMUA_AchrUn_randomP16890_001  78 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 120
                                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1675141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.74E-578125No hitNo description
PfamPF000101.9E-978120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1778132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00805163191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MELDEHGFLE ELLALRRDDW DSDSFPAGMG EFFFPCDGGL DCFQQISPHA LAPLSFPPAF  60
DVTKKKKKLE GMPSKNLMAE RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL  120
MERVKRLQQE MDVGPEQPNL LSTNEILARK SPKFDVERRD SDTRIEICCA AKPGLLLSTV  180
NTLEALGLEI QQCVVSCFSD FGLQASCSEG IDRWAVVGAE DIKQALLRNA GYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16585KKKLEGMPSKNLMAERRRRKR
27986ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387326.11e-146PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL19e-79BH093_ARATH; Transcription factor bHLH93
TrEMBLM0U9U81e-173M0U9U8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP16890_0011e-174(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-81beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]