PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP13420_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SRS
Protein Properties Length: 322aa    MW: 33640.6 Da    PI: 8.1915
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP13420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.32.5e-651102663154
                         DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk 82 
                                     gt++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa+rrerq  +aaa     +sa+++a+k++r   +++
  GSMUA_AchrUn_randomP13420_001 110 GGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPAARRRERQVSAAAA----GSSASTSAPKKPRLV-ASQ 184
                                    57899*********************************************9888776....444567889999976.777 PP

                         DUF702  83 qsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                                    + ++s+t++s+++++++++t+s          lP++v+++avf+cvrv+s+ddge+e+aY++ v+igG vfkG+LydqGl
  GSMUA_AchrUn_randomP13420_001 185 TGTASHTSTSNTTPPRSFDTTSshqdanvkesLPAHVRAPAVFKCVRVTSIDDGEDEYAYHAMVKIGGRVFKGFLYDQGL 264
                                    888899999********99999999******************************************************9 PP

                         DUF702 153 ee 154
                                    ++
  GSMUA_AchrUn_randomP13420_001 265 DD 266
                                    86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-60112265IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.2E-27114156IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.8E-26217264IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVVLASAASF HQQHHHESLL ASAAAEQHPI IPLLAAAPCL VEDDNPAARA KPGGIHLWQP  60
VLPQPPHHLP PAHGSNPNPN VTLSNYLRKP VPMLDPTGIL AGAGAVAAGG GTSTCQDCGN  120
QAKKDCSHRR CRTCCKSRGF ECSTHVKSTW VPAARRRERQ VSAAAAGSSA STSAPKKPRL  180
VASQTGTASH TSTSNTTPPR SFDTTSSHQD ANVKESLPAH VRAPAVFKCV RVTSIDDGED  240
EYAYHAMVKI GGRVFKGFLY DQGLDDGGSH ADDAKDAIPN ISELHLGNRN GGASSSSPML  300
PSDVFGGSGG LMGGTNYGNQ MN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126134e-36CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankAC1362194e-36AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBankAC1047104e-36AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBankAP0149614e-36AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386850.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-71LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM0U8V10.0M0U8V1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP13420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-70Lateral root primordium (LRP) protein-related