PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP09890_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 565aa    MW: 64627.4 Da    PI: 5.5903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP09890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013537554320
                                    ETTTTEEESSHHHHHHHH CS
                        zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                                    C+ Cg++F ++  L  H+
  GSMUA_AchrUn_randomP09890_001 537 CETCGETFETRNKLFAHL 554
                                    *****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.3E-24582IPR001623DnaJ domain
SuperFamilySSF465653.14E-237103IPR001623DnaJ domain
SMARTSM002711.1E-22871IPR001623DnaJ domain
CDDcd062575.37E-17968IPR001623DnaJ domain
PROSITE profilePS5007619.155979IPR001623DnaJ domain
PfamPF002263.0E-211076IPR001623DnaJ domain
PRINTSPR006257.6E-151129IPR001623DnaJ domain
PRINTSPR006257.6E-152944IPR001623DnaJ domain
PRINTSPR006257.6E-155171IPR001623DnaJ domain
PROSITE patternPS0063605675IPR018253DnaJ domain, conserved site
SuperFamilySSF576679.36E-15273327No hitNo description
SMARTSM004511.1E-5282316IPR003604Zinc finger, U1-type
PfamPF121711.2E-10285310IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003551.4285309IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287309IPR007087Zinc finger, C2H2
SMARTSM003556.7535559IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452535564IPR007087Zinc finger, C2H2
PROSITE patternPS000280537559IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAAEPRKRCL YEVLGVQRDC SQEEIRSAYK RLALQLHPDK VAASGTVDAT SATAAFQELL  60
HAYEVLSDPK ERAWYDSHRS QILFSDPSAA SKSHRPSAFF DLDLFSFFSN SVFSGYSDSG  120
KGFYKVYGDL FAKVYAQEIW FAKELGLGAD AVTPAPLIGN LECPYTQVTA FYSYWLGFCT  180
VMDFGWVDEY DASMGPNRRT RLRGLAAFVK KRDKRVVDMM VKKKLAEEKH RAEEKARKKE  240
EERKKMEKAK LFEEPEWTQS NEQEDDFHEL EDDDDDHKKK GREEFYCVVC NKKFKSDKQW  300
KNHEQSKKHK DKVAELRMAF KEEDEEFLEE EGDVEVHVSF DYEPPESEDS DVVEELSDKL  360
REDLEFPETN DDAEHLGERD DEASILEAMV AGRKNRKNNS LKQHDSSLND IYHPDNGEQS  420
SMDYDSQRRG RRHRTSRTGT SEADSEVKKE RGETSREDTE VKSHETSTEY HNEASSLLVE  480
ETTVINKKDR PTGKNQKSKK QQVDGKGAGK KVAPADTNNL PKGRKQKANS KAPSNACETC  540
GETFETRNKL FAHLGDTGHA SLKSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386492.10.0PREDICTED: DNAJ protein JJJ1 homolog
RefseqXP_009386493.10.0PREDICTED: DNAJ protein JJJ1 homolog
RefseqXP_009386494.10.0PREDICTED: DNAJ protein JJJ1 homolog
TrEMBLM0U7U90.0M0U7U9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP09890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP843378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.17e-96DNAJ heat shock N-terminal domain-containing protein