PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP08350_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 212aa    MW: 21570.1 Da    PI: 4.7272
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP08350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP80.54.5e-251522475
                            TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasecea 75
                                   ++++caar+F+L++eLG+++d++ti+WLlqqa+pai+++tg+++ +as+  a
  GSMUA_AchrUn_randomP08350_001  1 MPVLCAARVFQLTRELGHKSDGETIQWLLQQAEPAIIAATGSGTVPASALAA 52
                                   9*****************************************9999966622 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.334139IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-19156IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MPVLCAARVF QLTRELGHKS DGETIQWLLQ QAEPAIIAAT GSGTVPASAL AAAAAAGGPM  60
SHSSATVLAG LHRKLDEVDQ GAATAVRPIW AMVGAAASSN SNLGAGGSGD GSVGSFMQKM  120
GLLHGMELPS PNIGTMSFAS KFGGYGQQLP GLELGLSQDG HMGVLDPQAL GQFYQQMATE  180
RVGAGADGSG QLQQPQQRPA RQAEDDSQGS ED
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386304.11e-115PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD52e-43TCP20_ARATH; Transcription factor TCP20
TrEMBLM0U7E61e-149M0U7E6_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP08350_0011e-149(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.16e-37TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]