PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP06880_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 374aa    MW: 42105.1 Da    PI: 9.9252
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP06880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.8e-115899148
                            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                                   s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ 
  GSMUA_AchrUn_randomP06880_001 58 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDI 99
                                   78****9888.8*********3.....5**********99******96 PP

2B390.81.1e-28145236186
                                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                    f+k+ tpsdv+k++rlv+pk++ae+h      g    +++ l++ed  g+ W+++++y+ +s++yvltkGW++Fvk++gL
  GSMUA_AchrUn_randomP06880_001 145 FDKAVTPSDVGKLNRLVIPKQHAEKHfplqqaGAAAFKGVLLSFEDACGKLWRFRYSYWSSSQSYVLTKGWSRFVKEKGL 224
                                    89*************************8887655555999**************************************** PP

                                    -TT-EEEEEE-S CS
                             B3  75 kegDfvvFkldg 86 
                                    ++gD+++++++ 
  GSMUA_AchrUn_randomP06880_001 225 RAGDVITIQRST 236
                                    ********9554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-1158100IPR016177DNA-binding domain
PfamPF008471.1E-65898IPR001471AP2/ERF domain
CDDcd000183.13E-165898No hitNo description
SMARTSM003802.4E-1059130IPR001471AP2/ERF domain
PROSITE profilePS5103214.9745999IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-135999IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-38136250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-29141248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-21143243No hitNo description
PROSITE profilePS5086313.69145248IPR003340B3 DNA binding domain
SMARTSM010196.3E-21145247IPR003340B3 DNA binding domain
PfamPF023621.8E-25145236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
METSSLEDGC SEAEKQSPPQ WPQPPPAPVG LQRLGSGTSV VLDLEVGVEA ESRKLPSSRY  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARAYDIV DMIRKHTYQD ELHQSSRSAR  120
ADRRHNPPHG ATEEWRSGPH REHLFDKAVT PSDVGKLNRL VIPKQHAEKH FPLQQAGAAA  180
FKGVLLSFED ACGKLWRFRY SYWSSSQSYV LTKGWSRFVK EKGLRAGDVI TIQRSTAPEK  240
LLFIDRKTRA LGRHAAAGVQ APRLPVQVVR LFGVDIVKIP VAVASDVTEG NGVDWNGKRM  300
RDMERLMDHL FPNLSIFHVH VRVLIIVEIW REVECFSKTI GTLAAKGNIS VASLIVRLTF  360
LSKTSLYQSY MLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4814225811126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-34AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386126.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-107RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLM0U6Z90.0M0U6Z9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP06880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-107related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]