PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP02200_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 205aa    MW: 22389.9 Da    PI: 4.9505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP02200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-182978255
                            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   +ykGVr++k +grWv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  GSMUA_AchrUn_randomP02200_001 29 RYKGVRRRK-WGRWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALVYLRG 78
                                   7*****998.**********933...5**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-112978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-282987IPR001471AP2/ERF domain
PROSITE profilePS5103221.8522986IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-192986IPR016177DNA-binding domain
CDDcd000188.83E-262988No hitNo description
SMARTSM003807.0E-302992IPR001471AP2/ERF domain
PRINTSPR003672.4E-93041IPR001471AP2/ERF domain
PRINTSPR003672.4E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRRDRERSPE GCPVAEMMEC DGSGAGERRY KGVRRRKWGR WVSEIRLPNS RERIWLGSYD  60
TPEKAARAFD AALVYLRGRR AQLNCPDAPP PRIAGAGPLT YQQIQAAAAR HAAGDPSEAP  120
GATLPSQPSE EASDGFTVGS GVALDWSFLD PPQQEDLPTG GGKFPVAMDE FMYELYSPMS  180
AAQPAEMAED HGHVDYGSGS SLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-132286772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385648.21e-149PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLM0U5N21e-147M0U5N2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02200_0011e-148(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-34ERF family protein