PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP00900_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 227aa    MW: 23883.5 Da    PI: 6.6336
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP00900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.52.3e-3866197289
                            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 
                                    a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLlqqa+pai+++tgt++++as+  +a++   
  GSMUA_AchrUn_randomP00900_001  66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGYKSDGETIRWLLQQAEPAIIAATGTGTIPASALaSAAAAGP 145
                                    789*************************************************************9999966622111111 PP

                            TCP  81 sasnsssg................................................k 89 
                                    ++     +                                                +
  GSMUA_AchrUn_randomP00900_001 146 TG-----PmsfasllaghgqqlpglelglsqdahsgalnpqalnqfysqighvmgaA 197
                                    11.....12222333444433444444444444444445555555555555555551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3171195IPR005333Transcription factor, TCP
PROSITE profilePS5136927.93872126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPKDSSKQP QYVSRLPQER SLPLSHETDA AAAAESSDLV PAAASERHGG LQVVAAEKDE  60
QRKQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGYKSDGE TIRWLLQQAE  120
PAIIAATGTG TIPASALASA AAAGPTGPMS FASLLAGHGQ QLPGLELGLS QDAHSGALNP  180
QALNQFYSQI GHVMGAAGSA GSAGSGQLQH QQQQQVFSAE DDSQESE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385477.11e-86PREDICTED: transcription factor TCP20-like
RefseqXP_009385479.11e-86PREDICTED: transcription factor TCP20-like
RefseqXP_018676704.11e-86PREDICTED: transcription factor TCP20-like
RefseqXP_018676705.11e-86PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD55e-44TCP20_ARATH; Transcription factor TCP20
TrEMBLM0U5A21e-161M0U5A2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP00900_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.17e-43TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]