PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P14650_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 414aa    MW: 45661.9 Da    PI: 8.7999
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P14650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83.1e-093885154
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                           ++ykGV     +g W A+I+         r++lg+f +++ Aa+a++ a+ kl+
  GSMUA_Achr8P14650_001 38 TRYKGVMLQQ-NGHWGAQIYAH-----GHRIWLGTFKSEQAAAAAYDSAAIKLH 85
                           589***8777.8******9994.....4**********99***********997 PP

2B392.62.9e-29135225187
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k+ltpsdv+k++rlv+pkk+a+++     ++++ ++++ + d++ rsW+++++y+k+s++yv+tkGW++Fvk+++L+++D+v F++
  GSMUA_Achr8P14650_001 135 FLKELTPSDVGKLNRLVIPKKHATKYfpqvASVTADEVMVEFVDREDRSWTFRYCYWKSSQSYVFTKGWNKFVKEKRLQAKDTVAFYR 222
                            89****************************8899999**************************************************6 PP

                            -SS CS
                     B3  85 dgr 87 
                             ++
  GSMUA_Achr8P14650_001 223 CEE 225
                            654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-43884IPR001471AP2/ERF domain
SMARTSM003801.7E-1539100IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-133994IPR016177DNA-binding domain
PROSITE profilePS5103216.3843994IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-143994IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-34134227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-28134240IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-26134222No hitNo description
PROSITE profilePS5086312.675135242IPR003340B3 DNA binding domain
SMARTSM010192.5E-23135233IPR003340B3 DNA binding domain
PfamPF023621.4E-26135226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MISVATTMAA GREGSDSNSI VNWVSFAPCM ATTSNTSTRY KGVMLQQNGH WGAQIYAHGH  60
RIWLGTFKSE QAAAAAYDSA AIKLHHGDSH RNLPATPLTA HEHKFQETFT TDEAAPRPSL  120
PHAGTSGNVA FLEMFLKELT PSDVGKLNRL VIPKKHATKY FPQVASVTAD EVMVEFVDRE  180
DRSWTFRYCY WKSSQSYVFT KGWNKFVKEK RLQAKDTVAF YRCEERDGLR RTYCLIDIIR  240
CSGDGHRTSG FSWSKNGAVG LGLSCKRKPE EGDEEGNRTS GFSWSKNGTV GLGLGCKRKT  300
EEGDEEGDRS SGYSGRSGNG AMGLGLGLKR KTVEGDEEGD RSSGFSGSRS GAMGLGLSFK  360
RKTKEEDEVG EVVSGLAVTQ KSSEARQQEE EEQEKRKKRL RLFGVSITDT NDRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-30134223796B3 domain-containing transcription factor NGA1
5os9_B2e-30134223796B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685741.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6882e-66RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLM0TQG80.0M0TQG8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P14650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1971158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-61RAV family protein