PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P14640_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 484aa    MW: 53127.1 Da    PI: 5.655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P14640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12294340455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N +f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr7P14640_001 294 NHVEAERQRREKLNRRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 340
                            799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4249207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.768290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-15293344No hitNo description
SuperFamilySSF474598.37E-19293357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10294340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17294352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-16296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSEFSWSEEE RRMAAAVLGP EAFGYLAASR ASSDGLTAAA FSSSAEADLQ RRLLDLVEGP  60
RDRPGLGWNY AIFWQISRAK SGDLVLGWGD GSCRDPRDGA EAAAAAAAAA DNYALRLDQV  120
TDAEMFFLVS MYFSFPRGKG APGRALAAGK HLWILSPSDY CYRGFLAASA GFRTIVVVPF  180
ETGVLELGSV RSLTESPDAL QTIKSVFLED NSWDTQLKSG SRSWMLFPNV RKGMQSFSWN  240
HVRGLNSHQQ QFGNGLIIDF SVGGTSRAGA LIAHIGALEG DHADPANGRE EPLNHVEAER  300
QRREKLNRRF YALRAVVPNI SKMDKASLLG DAIAYITDLQ KRLKEMESER EMFLESGMVD  360
PSTRVCCPEF DVQAQQDEVI VQVSSPLNTH PVSKVFQALK EAEIDVAESK VSGGEDTIQH  420
TFIIKSPGSE QQTKDKICKS VPNKGAELWC SIIINAIIIH LKNLFLSGAF DISIECLSHV  480
IHFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-19462076192Transcription factor MYC3
4rqw_B7e-19462076192Transcription factor MYC3
4rs9_A7e-19462076192Transcription factor MYC3
4yz6_A7e-19462076192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2628860.0KR262886.1 Musa AAB Group cultivar Nendran ABA inducible bHLH TF-like protein gene, partial cds.
GenBankKR2628850.0KR262885.1 Musa ABB Group cultivar Monthan ABA inducible bHLH TF-like protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409474.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
TrEMBLM0THK10.0M0THK1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P14640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.18e-80bHLH family protein