PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P02960_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 26635.9 Da    PI: 7.3244
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P02960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.87.6e-25958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien   rqvtf+kRr  +lKKA+ELSvLCdae+ +iifs++gklye +
  GSMUA_Achr7P02960_001  9 KRIENPVHRQVTFCKRRMSLLKKANELSVLCDAEIGIIIFSTHGKLYELA 58
                           79*********************************************965 PP

2K-box58.23.6e-20981831599
                  K-box  15 eslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             + +qe++ Lkkei+ L +++R +lGe++ + ++l eL  Le++Le  + +iR++K+++++++i+ l++ke  l+ +n  L++k+ 
  GSMUA_Achr7P02960_001  98 HEFKQEISMLKKEIDLLHKSLRCMLGEGIaGHMTLDELLVLEKHLEMWMYHIRATKMQIMFQEIQSLKNKEGILKAANVFLQEKIL 183
                            5679*************************447***************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.03161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-26174IPR002100Transcription factor, MADS-box
CDDcd002656.67E-38279No hitNo description
PRINTSPR004041.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.77897188IPR002487Transcription factor, K-box
PfamPF014863.6E-2398182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MARGKVQLKR IENPVHRQVT FCKRRMSLLK KANELSVLCD AEIGIIIFST HGKLYELATK  60
GTMEGLIDRY KTACGDAHST AGGGDANQSQ VILPPSLHEF KQEISMLKKE IDLLHKSLRC  120
MLGEGIAGHM TLDELLVLEK HLEMWMYHIR ATKMQIMFQE IQSLKNKEGI LKAANVFLQE  180
KILEQNSLFD VSPMLVQQNG HFDAGQMVAA DSPYPLTVQY EHSNLGGSDM GFSYLSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15185183MEF2C
5f28_B1e-15185183MEF2C
5f28_C1e-15185183MEF2C
5f28_D1e-15185183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408325.11e-168PREDICTED: MADS-box transcription factor 26-like
SwissprotA2YQK97e-87MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G87e-87MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLM0TE861e-176M0TE86_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02960_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-67AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]