PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24230_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 223aa    MW: 23718.7 Da    PI: 12.3373
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.16.6e-312778557
            ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                           rY+eCl+NhAa++Gg+++DGCgEfmp  ge+g+ +alkCaACgCHRnFHRre 
  GSMUA_Achr6P24230_001 27 RYRECLRNHAAAMGGQSYDGCGEFMPG-GEDGSLEALKCAACGCHRNFHRREG 78
                           8*************************9.999********************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-192777IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-282777IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-282777IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.5412877IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDLSVVPYKG GSEEAAEAAG GGGGGGRYRE CLRNHAAAMG GQSYDGCGEF MPGGEDGSLE  60
ALKCAACGCH RNFHRREGIS LVQSPPPQPR RTVAAGWGRR RRRGARRQRP RRRGRGSGSA  120
PSSRRSRRRR CRPSRRSWGG ASRSRTTSRW TSSAFRSASS ATSSRSGCTT TRTTSPPPPP  180
PLPPTPLPPP PPLPLPQSLP PAMPPPPRPS GSSPTRMVHI VSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110129RRRGRGSGSAPSSRRSRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0T9R91e-149M0T9R9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24230_0011e-150(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-25homeobox protein 31