PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P19120_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 505aa    MW: 55664.4 Da    PI: 7.4989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P19120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000133994311754
                            HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++   L++l+ +      +K + a++L +A+eYIk L
  GSMUA_Achr6P19120_001 399 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 431
                            55666677777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-5378436No hitNo description
PROSITE profilePS5088812.131382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-11392451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-8392451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MFLLIHLLFY QAELEPKLPQ WHRRKKLLLS HFVTSNNPGS QLDINSSTQY GDNAHQICIC  60
QANGRGNNSI HKTPSYHQLL SWYISCGQYI NMCVETLHSS ELAPAHSTGS THHHKKLYIM  120
AGQHTKPRKT CQCEAAEEKS SMADQFQAGS CSDGSWWNTA RTGGPMIPAS VSCSTEITSS  180
GGSFHWPAVG DVFEAKSRSR DESPVSISNS SITFQDLQNS HGSAPVITTP PAMDFGLSSP  240
TADWSQPFFC SSMNGSSFLH DHHVLSSKIN SMPLLSASGG LPSALLQDLL EPDSRLERSL  300
HDAQVMKNKS SIDYHEQLLP PKQQTHFSDK TPFWDPSESS VTEAHSSYCN NPFAKANSGV  360
GVSFPTLEKK AGSEPAGKKP RIEKQSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV  420
LHEAIEYIKF LHDQVRVSSA PYLTNSQQMQ QVNATKSLDK TKDCEGQHQD LRSRGLCLVP  480
ISSTFAVANE IPTDLWSTTF IGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260329e-60AC226032.1 Musa acuminata clone BAC MA4-12B6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405008.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLM0T8B00.0M0T8B0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P19120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-45bHLH family protein