PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P11680_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 162aa    MW: 18078 Da    PI: 4.6585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P11680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-171262155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++ykGVr +k +g+WvAe r p++   r r +lg+f ++e+Aa a++aa  +l+g
  GSMUA_Achr6P11680_001 12 PRYKGVRLRK-WGKWVAEARYPNS---RERLWLGSFPSPEMAAMAYDAAVYCLRG 62
                           68******99.*******888732...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.77E-241272No hitNo description
PfamPF008471.5E-121262IPR001471AP2/ERF domain
SMARTSM003801.9E-281376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-261371IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-201371IPR016177DNA-binding domain
PROSITE profilePS5103221.5751370IPR001471AP2/ERF domain
PRINTSPR003675.8E-81425IPR001471AP2/ERF domain
PRINTSPR003675.8E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEKQESSKEV APRYKGVRLR KWGKWVAEAR YPNSRERLWL GSFPSPEMAA MAYDAAVYCL  60
RGPGEALNFP DHPPNIPSAD RLSRYEIRQA AVGHAEEGAK RRAQQEEGAK LVDPGEGTSG  120
PGTFEEPATE TLPALYSSTM VSGAWSWDDD DDGDAWFPLW NF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405172.21e-115PREDICTED: ethylene-responsive transcription factor ERF018-like
SwissprotQ84QC26e-33ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLM0T6661e-115M0T666_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P11680_0011e-116(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]